In Folder Options you are required to specify the Input Folder and Output Folder.
Input Folder is a folder monitored by the PDF2AFP Transform Server program, and once a PDF file is detected in this folder, it will be taken out for processing. After it is transformed by the PDF2AFP server it turns out to be an Adobe PDF file, and will be placed in the Output Folder.
Keep tree structure for AFP files: this option enables the output AFP files to be created with hierarchical folder structure in the target folder.
Delete AFP file after conversion: the source PDF file will be deleted once it is converted to an AFP file.
Enable logging: Specify a log file, and analyze logged key events in the log file.